Mask Analyzer
napari-mask-densityA napari plugin for analyzing mask density in regions of interest
- Da Kuang
First released:
11 April 2025Last updated:
11 April 2025Installs:
0Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Plugins
Browse plugins: 499
psf-analysis-CFIM
psf-analysis-CFIMA continuation of napari_psf_analysis, developed for CFIM - KU
- Markus L. Bille
First released:
11 February 2025Last updated:
11 April 2025Installs:
125Plugin type:
Reader, Widget
Fit Ellipsoid
fitellipsoidA plugin to that fits an ellipsoid to a set of user clicked points in 3D
- Pierre Weiss
First released:
08 April 2025Last updated:
11 April 2025Installs:
28Plugin type:
Widget
MMV-Region Segmentation
mmv-regionsegNapari plugin for the segmentation of regions by flood
First released:
21 March 2025Last updated:
10 April 2025Installs:
27Plugin type:
Widget
Workflow step:
Image segmentation
brainrender
brainrender-napariA napari plugin to render BrainGlobe atlases and associated data as layers.
First released:
13 October 2023Last updated:
10 April 2025Installs:
4.6KPlugin type:
Widget
dmc_brainmap
napari-dmc-brainmapDMC-BrainMap is an end-to-end tool for multi-feature brain mapping across species
- Felix Jung
First released:
18 February 2025Last updated:
10 April 2025Installs:
51Plugin type:
Widget
cylindra
cylindraSpectral analysis, simulation and subtomogram averaging of heterogenic cylindrical structures
- Hanjin Liu
First released:
01 May 2024Last updated:
09 April 2025Installs:
1.5KPlugin type:
Widget
splinebox
napari-splineboxA plugin to create splines with napari.
- Florian Aymanns
First released:
01 October 2024Last updated:
09 April 2025Installs:
63Plugin type:
Reader, Widget, Writer
Workflow step:
Image segmentation
Image annotation
EpiCure
epicureNapari plugin to manually correct epithelia segmentation in movies
- Gaëlle Letort
First released:
18 October 2024Last updated:
09 April 2025Installs:
187Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
vollseg-napari-trackmate
vollseg-napari-trackmateTrack analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library
- Varun Kapoor
- Mari Tolonen
- Jakub Sedzinski
First released:
31 December 2022Last updated:
09 April 2025Installs:
1.6KPlugin type:
Sample data, Widget
NuclePhaser
napari-nuclephaserA Napari plugin to detect and count nuclei on phase contrast images
- Nikita Voloshin
First released:
02 April 2025Last updated:
08 April 2025Installs:
47Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
Himena
napari-himenaPipeline between napari and himena
- Hanjin Liu
First released:
08 April 2025Last updated:
08 April 2025Installs:
5Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
napari-annotation-project
napari-annotation-projectA napari plugin to keep images and annotations as a re-loadable project
- Guillaume Witz
First released:
01 November 2023Last updated:
08 April 2025Installs:
4.1KPlugin type:
Widget
AlveolEye
AlveolEyeReads lung slides with AI-driven and classical methods
- Joseph Hirsh
First released:
22 May 2024Last updated:
07 April 2025Installs:
151Plugin type:
Reader, Sample data, Widget, Writer
napari ConvPaint
napari-convpaintA plugin for segmentation by pixel classification using pre-trained neural networks for feature extraction
- Guillaume Witz
First released:
01 November 2023Last updated:
07 April 2025Installs:
2.8KPlugin type:
Sample data, Widget