neurofly
neuroflyA framework to annotate single neurons at whole-brain scale
First released:
30 October 2024Last updated:
03 April 2025Installs:
145Plugin type:
Widget
Plugins
Browse plugins: 495
samcell-napari
samcell-napariA napari plugin for cell segmentation with SAMCell 1.0
- Saahil Sanganeriya
First released:
02 April 2025Last updated:
02 April 2025Installs:
0Plugin type:
Sample data, Widget
napari-stitcher
napari-stitcherStitch napari image layers in 2-3D+t
- Marvin Albert
First released:
18 October 2024Last updated:
02 April 2025Installs:
154Plugin type:
Reader, Sample data, Widget, Writer
DINOSim Segmentation
napari-dinosimA simple plugin to use DinoSim in napari
- Aitor Gonzalez-Marfil
First released:
05 March 2025Last updated:
02 April 2025Installs:
97Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
NuclePhaser
napari-nuclephaserA Napari plugin to detect and count nuclei on phase contrast images
- Nikita Voloshin
First released:
02 April 2025Last updated:
02 April 2025Installs:
0Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Hyperspectral Imaging Analysis Plugin
napari-hsi-analysisNapari plugin to perform analysis on Hyperspectral Imaging datasets.
- Alessia Di Benedetto
First released:
12 March 2025Last updated:
01 April 2025Installs:
51Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
napari ARCOS
arcos-guiA napari plugin to detect and visualize collective signaling events
- Benjamin Grädel
First released:
24 February 2022Last updated:
01 April 2025Installs:
707Plugin type:
Sample data, Widget
EpiCure
epicureNapari plugin to manually correct epithelia segmentation in movies
- Gaëlle Letort
First released:
18 October 2024Last updated:
01 April 2025Installs:
180Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
psf-analysis-CFIM
psf-analysis-CFIMA continuation of napari_psf_analysis, developed for CFIM - KU
- Markus L. Bille
First released:
11 February 2025Last updated:
28 March 2025Installs:
116Plugin type:
Reader, Widget
Mouse lungs segmentation
unet-lungs-segmentation3D U-Net model for the segmentation of the lungs in mice CT scans.
- Quentin Chappuis
- Center for Imaging
- Ecole Polytechnique Federale de Lausanne (EPFL)
First released:
12 March 2025Last updated:
28 March 2025Installs:
125Plugin type:
Sample data, Widget
Labels Control
napari-labelsAdding intuitive label color management, allowing custom class colors, per-class opacity, and colormap control to enhance visual clarity.
- Lars Krämer
First released:
26 March 2025Last updated:
28 March 2025Installs:
67Plugin type:
Widget
Manual registration
napari-manual-registrationA simple plugin to register 2 views of the same object
- Alice Gros
- Jules Vanaret
First released:
13 August 2024Last updated:
27 March 2025Installs:
202Plugin type:
Widget
nDev
napari-ndevnapari widgets to (batch) process images from start to finish.
First released:
31 January 2023Last updated:
27 March 2025Installs:
1.3KPlugin type:
Reader, Widget
FLIM phasor plotter
napari-flim-phasor-plotterA plugin that performs phasor plot from TCSPC FLIM data.
- Marcelo L. Zoccoler
- Cornelia Wetzker
First released:
17 August 2023Last updated:
27 March 2025Installs:
506Plugin type:
Reader, Sample data, Widget
Workflow step:
Image annotation
Image segmentation
napari-omero
napari-omeronapari/OMERO interoperability
- Peter Sobolewski
First released:
24 June 2020Last updated:
27 March 2025Installs:
875Plugin type:
Reader, Widget